About us
Facilities
Resources
Staff only
Links
Contact
Location


Organizations

State Key Laboratory of Plant Genomics

National Centre of Plant Gene Research (Beijing)

IGDB


Funding

CAS

NSFC

863

Most


Others

Rice website

 

The Rice Annotation Project (RAP)

http://rapdb.dna.affrc.go.jp/

Oryzabase integrated rice science database

http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp

Rice Genome Annotation Project

http://rice.plantbiology.msu.edu/

GRAMENE

http://www.gramene.org/

Rice Genome Research Program(RGP)

http://rgp.dna.affrc.go.jp/E/index.html

KOME

http://cdna01.dna.affrc.go.jp/cDNA/

RIKEN

http://rarge.gsc.riken.jp/

Primer Design

 

Primer3(v.0.4.0)

http://frodo.wi.mit.edu/

Primer Blast(NCBI)

http://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi?LINK_LOC=NcbiHomeAd

siRNA design

http://www.dharmacon.com/HomePage.aspx

Gene-specific siRNA selector

http://bioinfo.wistar.upenn.edu/siRNA/siRNA.htm

Oligonucleotide Properties Calculator

http://www.basic.northwestern.edu/biotools/oligocalc.html

PCR Now

http://pathogene.swmed.edu/rt_primer/ 

PCR Box Titration Calculator

http://www.attotron.com/pub/pcrtitr.htm

Protocols

 

Protocol online

http://www.protocol-online.org/

CSH Protocols

http://cshprotocols.cshlp.org/

Nature protocols

http://www.nature.com/nprot/index.html

Nature methods

http://www.nature.com/nmeth/index.html

Major sequence databases

 

GenBank(NCBI)

http://www.ncbi.nlm.nih.gov

European Molecular Biology Laboratory (EMBL)

http://www.embl-heidelberg.de

DNA DataBank of Japan (DDBJ)

http://www.ddbj.nig.ac.jp

Protein International Resource (PIR) database

http://www-nbrf.georgetown.edu/pirwww/

The SwissProt protein sequence database 

http://www.expasy.org/cgi-bin/sprot-search-de

Promoter prediction

 

Finding Promoter

http://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/DNA/dna21b.html

TFSearch

http://www.cbrc.jp/research/db/TFSEARCH.html

Promoter 2.0 Prediction Server

http://www.cbs.dtu.dk/services/Promoter/

Neural Network Promoter Prediction

http://fruitfly.org:9005/seq_tools/promoter.html

Plant Promoter Sequences

http://mendel.cs.rhul.ac.uk/mendel.php

Plant Cis-acting Regulatory DNA Elements (PLACE)

http://www.dna.affrc.go.jp/PLACE/

Alignment of sequence pairs

 

Clustalw

http://align.genome.jp/

ClustalW2

http://www.ebi.ac.uk/Tools/clustalw2/index.html

Kalign

http://msa.sbc.su.se/cgi-bin/msa.cgi

Chip data analysis

 

GOEAST 

http://omicslab.genetics.ac.cn/GOEAST/

Patent search

 

USPTO

http://patft.uspto.gov/

EPO

http://www.epo.org/